rs45838254 SNP Detail

Summary

• ID
  rs45838254
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    Ggaagcttg gaatattcct cagaggtata
  cacttgccta gcatgtgcaa gaccctggct tagtcctcca atcctgcCTC CTAACTGTGT
  AGAATTTGAA ATCTGTGTGA AATCATATGA AACCCATACT TTCAACCCCA CTCCCCCCCC
  M
  AAAATCTTTA TTTTCATGCA TACTTTGTGA AAACAAATTG AGACAAAATT AAATTCCTGT
  CCACCTGAGA GAGAAAGACA TCTTTCCCCA CTGCTCTGGC ATCTGTGTGC ATGCTTTTAA
  TCCCAAGACA CTTCTTAACC TCTCACCCAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079088	ENSMUSSNP5849997	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss320429662	CHEV_2_101479152	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45838254					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469340 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	616 bp proximal
Tssr25364	transcription start site region 25364	1107 bp downstream
Tssr25365	transcription start site region 25365	1231 bp downstream