rs45837636 SNP Detail

Summary

• ID
  rs45837636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107226334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTACTTAT ATACACAGCT AGGTGTGATG GCCCAGTGTC
  CTGGGAGGCA GAGGCAGGAC GACCTGAGTT CAAGGCCAAT CTGGGGCATA TATATAGTAA
  R
  TCCCTAGAGG TGCAGTAAAA AAGAAAAGGA AGCCACACAA GTATTTATCC TTTTGTCTTT
  TCCTTAAAAA AGGAAAAGAA AAGTTGGCTT ATTTGTATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147178152	ENSMUSSNP3502699	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321247969	CHEV_4_107041742	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45837636					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107226334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14540	CpG island 14540			744 bp distal
Ndc1	NDC1 transmembrane nucleoporin			Intron
				Noncoding-Transcript-Variant
Rr367664	regulatory region 367664			1250 bp downstream
Rr596979	regulatory region 596979			1343 bp distal
Rr596980	regulatory region 596980			1748 bp distal
Rr596981	regulatory region 596981			458 bp distal
Rr596982	regulatory region 596982			1276 bp distal
Rr596983	regulatory region 596983			832 bp distal
Tssr38245	transcription start site region 38245			1383 bp downstream
Tssr38246	transcription start site region 38246			1324 bp downstream
Tssr38247	transcription start site region 38247			1099 bp downstream
Tssr38248	transcription start site region 38248			1080 bp downstream
Tssr38249	transcription start site region 38249			1065 bp downstream
Tssr38250	transcription start site region 38250			1053 bp downstream
Tssr38251	transcription start site region 38251			797 bp downstream