rs45834401 SNP Detail

Summary

• ID
  rs45834401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19526990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTACATG TCTAAGTACA
  GTGACATCGT AATTCATGAC ATTGGCCACC ATTGTATATT CTATAATTAG AAAGAACTTC
  TCAGTGCCAG TGTCCCCTCA GTGAAAAGAG ACCAGCTTGT GTACTGTCAT GTAGAATAAT
  GACTGCAGGT GCACAAACTC CTTAACATAA AATCTGGCCT TCAAAATGTT TTCCAGTGTT
  K
  TAAGTTCACA ATATTTCCTG CTCTGTAGCT TGACTCTTTA CATGGACGCT TACATTAACT
  ACTTTATTAC TAATGTTTTC AATTTGTGTA ATTACATGAA GCATCACAGA AAGGTAATGT
  TCTGTAGTAG AGCCAAACTT ACCTCCTCCC CCCCTCAAGA GAAAAGGGGG TCATTATGAA
  TATGTGTTTA TTAAATCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626613	NES15515228	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45834401					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626613	NES15515228	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19526990 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1738 bp upstream
Trgj4	T cell receptor gamma joining 4	608 bp downstream
Tssr118539	transcription start site region 118539	1122 bp downstream
Tssr118540	transcription start site region 118540	1049 bp downstream
Tssr118541	transcription start site region 118541	993 bp downstream
Tssr118542	transcription start site region 118542	915 bp downstream
Tssr118543	transcription start site region 118543	879 bp downstream
Tssr118544	transcription start site region 118544	859 bp downstream
Tssr118545	transcription start site region 118545	833 bp downstream
Tssr118546	transcription start site region 118546	751 bp downstream
Tssr118547	transcription start site region 118547	678 bp downstream
Tssr118548	transcription start site region 118548	659 bp downstream
Tssr118549	transcription start site region 118549	81 bp downstream
Tssr118550	transcription start site region 118550	622 bp upstream
Tssr118551	transcription start site region 118551	1380 bp upstream
Tssr121588	transcription start site region 121588	1111 bp upstream
Tssr121589	transcription start site region 121589	438 bp downstream
Tssr121590	transcription start site region 121590	1504 bp downstream