rs45827119 SNP Detail

Summary

• ID
  rs45827119
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18908890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAAAAC TACTCTGAGA
  TTTTATCTGA CCTTTGTCAC AATGACTAAG ATCAAGAAAA CATCTGAAAA AATAGTACTA
  GCAAGAATGT GGCATTGCAA ACTGGTACAG CCAGTAATAA TGGAGAAATC TCAAAACACT
  AAAGAGCTAC TATACAATCC AGCTTTATCA CTTCTGAGCA TATGCCCAAA GGACTATATA
  K
  CCTACTCCAC GTTTACTTAG TCATGATGAT TGCTGCTTTA TCCACAGCAG GTAGAAAATG
  GAAACGACCT AAATGTCCTT CAGCTGAAGA ATGGATAATG AAAATGGGTA CACTATGTAC
  TATTGAATAC TATTCAGGTG TCAAGAAAAA CGAAACCATA AAATTTCCTG GTAAAGAATG
  GAACGGGAAA CTATTGTACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133043364	ENSMUSSNP3108342	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45827119					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18908890 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	1488 bp distal