rs45821301 SNP Detail

Summary

• ID
  rs45821301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27282899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAAGGACA CTGAAGGAGC CAAGCCCTTA GAGCAAGACC
  CTGGAATGTG GTATTAAGAA GCTTCAGAGG CCCCTCAGCG GTTTCCTCTA CCTATAGTTA
  Y
  TCAAAGGCCT CGAGAAGGAA GGCAGGCAGG CTTGCCTCAC TTGGCACACG GAGGATCTAG
  CCTCAGCGGG CTCTTGTTTA CCTGCCCTCA AGACTTCAGT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380263	NES15882843	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	T	T	T	T	T	T	T	T
ss134703044	ENSMUSSNP31013	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45821301					SNP	T	T	C	C	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380263	NES15882843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27282899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			within coordinates
Rr574373	regulatory region 574373			331 bp proximal
Rr574374	regulatory region 574374			354 bp proximal
Tssr28616	transcription start site region 28616			1448 bp downstream