rs45816965 SNP Detail

Summary

• ID
  rs45816965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121393597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTTTCCT TTCCTTCTTC TACCAAGAAA AAAGTAAAAG
  AATATGTATC AAAAAACCAC AAATGTCTAT CACAGAATAA AGTTAACTTA TTACTAATTC
  Y
  ATATTTCATT TTACTTTATA TCAGATCTTG AAGATTTTGT AACAGACAGG TATTACAGTT
  ATGCCGGCAT CTAAAGCAAT ATTAGTTAAT ATTGTCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135724823	ENSMUSSNP4005185	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320904152	CHEV_3_121302866	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45816965					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121393597 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	678 bp proximal
Rr584125	regulatory region 584125	1873 bp proximal