rs45816117 SNP Detail

Summary

• ID
  rs45816117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74468071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTATTTC ATGTGATGTC
  TTTGGGAATC TACCTTGGCC ACATTTCCTG GCAGGGCTCA TAATAACCTC TTGTTACTCT
  CAGAACTGCT GACATGTCTG GTCCCTTTTG TCAGCCCGGA GATTTGGGAA CTGTGCTTTC
  TCTGAGTCAC CTTGCTTAGG AAGTAGCTGC GTGCCCTCTG GGTCCCTGTG CTAATCCTTG
  Y
  GTGTCACTTC CTTCTTTGCC TTAGCAAGGT AGTGAAGGCA GACAAGCAGC TCAAGTTGGA
  TCCCTCCCAC ATGAGCCGTT AGCCTCTCTG AGTGTCTAAT ATAAGCATCT TAGGCCACCA
  GCTTCTCTCA ACGTGTCACT TGAGTTCCAT CCTACAGGTT CCCGTACACA TTATTTTTAT
  CATTCAGTTG TAATTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148147042	ENSMUSSNP4034328	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45816117					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74468071 () rs orientation: forward

Symbol	Name	Function Class
Tssr131567	transcription start site region 131567	1595 bp upstream