rs45812392 SNP Detail

Summary

• ID
  rs45812392
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116408287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGACAGT AGCTGTTGCT
  TACTGAGCAT GTGCGAGGTA ACCACAGACA CTGTGGAAGT GACTTCCAGA AATGAACCCC
  GTATTTAGGT GCCACCCTTA ACCTCACTGC AGAGATGCTG AGGCTGCAAC ACAGAGTTCT
  GTTGTTACTC GCTTGCTCCA GCCAGGGAAA GAGAGGGGTG TAACCCGGCT GTTGTTTGCC
  W
  GTCTTTCTTT CCAGCACACA GAAATGTTTG TTTTGCCCTG CTGGGGTTTA ACCCAGGGCC
  TTCTGCATAC TTGGCAAGTG CTCTGCAGTG AGCTTCAAAC CTTGCACATC AGAGAAATGT
  AAACAGTGTT GGTGTTTGCT ACAGCACATC TGTGCGTGCC TTGGCACGAG TGATAGTCTC
  TATTAGTAGA AGTTATTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436669	NES15940309	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45812392					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436669	NES15940309	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116408287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375622	regulatory region 375622			1673 bp upstream
Rr583752	regulatory region 583752			62 bp distal
Rr583753	regulatory region 583753			within coordinates
Sass6	SAS-6 centriolar assembly protein			Intron
				Noncoding-Transcript-Variant
Trmt13	tRNA methyltransferase 13			51 bp upstream