rs45806024 SNP Detail

Summary

• ID
  rs45806024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCTAC CTTAGTGGTC
  ATTTCAAAGA AAAAGGATGA CCTTACCAAA AGACAATTAT TATACACTTC CCAAGCAGCT
  GACTTTTCAT CTTACATTAA GAATTTATAA CTTAATGCTC TATATCTGAA CAAACACAGC
  CAACGGTGAA AGCCTGGGGC GTGGAGAAAC CATGATATAG TTGCCTAAAA CAAACTGCCA
  Y
  GTTTAAATAA ATCAACCAAA CTAATCACAA GTAAAAGACA CTAAGGCTGG CTTTACTCAG
  GTCTTTTGAA TCCTGTGTTT CACAAAGGCA CAAGAGTTGC TTTCCTAAAT TTAAGGAAAA
  AGAAGTCAGT ATTTCACTGA CTTGATTTCC AGCTCTGTGT GACATGAGCC AAGCCAACAG
  AGAGCGAGGT AATAACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135872270	ENSMUSSNP1265459	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957245	CHEV_3_127531847	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45806024					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622578 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	626 bp downstream
Rr584870	regulatory region 584870	1413 bp distal
Rr584871	regulatory region 584871	1290 bp proximal
Rr584872	regulatory region 584872	1880 bp proximal