rs45803252 SNP Detail

Summary

• ID
  rs45803252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135905183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTAGCAC ATAATAGGCT
  CTCAAGAAAT TTCAACCCCC AAGTGCTTAA CTCTTCCAGA GCAATTGAAT TGTGCTGCAG
  GCTTGTTTAG CAATGTGGCC AGTATGGCAG TAATGAACCA GATTGCTTAG ATAATTGGCA
  TTCTCTCTTC CACATACAAG ATTGATGGGT TCAATATAAG TCTGTGCAGT TACCCGTTCT
  Y
  GTAATAGAGA GTTCTCATTA AGGAAATGGA TTAATTGGCT TACTGATGTT TTACTGAGAG
  CCAGATTTGA ATAAGTGGAC TCGGCAGAAC GGAGAAAAGA AAATTAAACA CTAATAATGA
  GAGAAATGTG CGTGCTTATG CTGAAATCTC AGCCACAGGC TCAAAGCAAG AATCTCAGCT
  TGCTGCTTGT CAGTGAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61085147	NES16592823	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45803252					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085147	NES16592823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135905183 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Gm66328	predicted gene, 66328	within coordinates
Rr585811	regulatory region 585811	within coordinates