rs45802781 SNP Detail

Summary

• ID
  rs45802781
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCAGTCC AAATTTCTAC
  TTTTTAAGTA GAAATTATGC AATAAAAGGC TGTCTCAGCT TTTCAGATGG AGCATTTTTC
  GTTCTACTCT TCAGAATCAT AGATTCAGGT GGTGGACGTC ATCTGATTCT CTTTTGGATG
  ATTTCTCATC AGTTGATCCC TCTCCATTTT CTATCCCAGT TTCCTTTGGC CAAAAGTACT
  M
  AACAACACTG TAAACATCAC CCAGCTTCAT ACAGCTGCAG TAACCCAGTT ACCGAGGTCG
  TGCTCGTGTG TGTGGCCCCC CACTACTGCT TCCACAATTA CTGTCCATTG CATATTTTAT
  ACAATGAATA CTGTTATTTA TATATGCATA AAATGATCAA GTTTTTTTCT CTATACAAAG
  ACATCCTCTT CCAGTGTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss61095958	NES16609921	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A		A	C		A
ss321009523	CHEV_3_145769928	CHEVERUD	SCREENING_POP	f	SNP						A			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs45802781					SNP	C	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61095958	NES16609921	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1027 bp upstream
Rr586924	regulatory region 586924			181 bp proximal
Rr586925	regulatory region 586925			1156 bp proximal
Tssr36027	transcription start site region 36027			1025 bp downstream
Tssr36028	transcription start site region 36028			1045 bp downstream
Tssr36029	transcription start site region 36029			1083 bp downstream