rs45800578 SNP Detail

Summary

• ID
  rs45800578
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136798399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACC TAACTCCACG TGGCTGTGGA
  C
  AGTTAAGGAT TGTGGAAGGG GAAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147592685	ENSMUSSNP4396598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321360817	CHEV_4_136627003	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45800578					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136798399 () rs orientation: forward

Symbol	Name	Function Class
Gm68277	predicted gene, 68277	within coordinates
Rr602532	regulatory region 602532	199 bp proximal
Rr602533	regulatory region 602533	1421 bp proximal
Rr602534	regulatory region 602534	1692 bp proximal