rs45800132 SNP Detail

Summary

• ID
  rs45800132
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117919046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCAAATGAG AATACACGAG TGCATGCACA GGAAATAAAG
  GGCTAGGGAA AGAGCAAAGA TGGTCCCTGA AGTCCAAGAA TGTCTGAGCT CTCCTGGGAT
  A
  ACAGACTAAG AGTGTTAGAA GCCTTAAGAG TTAGGGTGGA AGGCCAGGTC TAGGGCTTTT
  ACTAGGAATA GCTAGAAAGA TGTGTAGGGA AGGTGCCTCA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147298841	ENSMUSSNP4085450	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs45800132					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117919046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598297	regulatory region 598297			264 bp distal
Rr598298	regulatory region 598298			101 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant