rs45799580 SNP Detail

Summary

• ID
  rs45799580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146604597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTAAAG ATTATTGGCC
  TAGTAAAAGC CTTAACTCAG CCTAATTTCA GGTCATTGTT AAATATAATA AATGATTGTA
  AAGGCGCTAA TGCAAAAATT ACAACATTAA TGCAAACTTT ATTTTTTTAA AAAATCAAAA
  TAATAAATTA GTCAATATTG TCCCTTCTTT GCATTGAGAT TATCTAGTTG CAAGATTAAC
  R
  AACACTAAGC AAATGCAGTT GGAAATTACA TTATTTCCTG TCTCATGGTG GTAATGCCAC
  GTTTGTGTGC ATACACAGGA AAGAGAGGAA AGGCGAAAGG AATGGGGGGG GGAGGGCGTG
  GGGAAGGGGA AGGGAAGAGG AAGGTGAGGG GAAGTTGTGC TGTGATGTGT ATATACTTGT
  GTCTGCAGGT GCGTGCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61097369	NES16605557	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45799580					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097369	NES16605557	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146604597 () rs orientation: forward

Symbol	Name	Function Class
Rr587102	regulatory region 587102	1448 bp proximal
Tssr1089	transcription start site region 1089	615 bp upstream
Tssr32371	transcription start site region 32371	335 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron