rs45798588 SNP Detail

Summary

• ID
  rs45798588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141171158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATGTTT ACTTAAATTC
  TATGAGTATT TTGCCTGCAT GCTTGTATGT ATGTCTAATT CCTGCAAATA GCAGAAGGCA
  TCAGATCTCT TGAAATTGGA GTCACCATGT GGGTGCCGGG AATCGAAGCC AAGTTCTCTA
  CAAGAGCAAA AGTGTCCTTA ACCTCTGAGC TATCTCTCCT GCCAGCCCCC TGGCTTTTAC
  Y
  GTGGTTTTCA AGATAGAGCT TGTGTAGCAA GCAAGCACTT GTGCCACTGA CCTGGCCCGC
  GGGTCAGTAA ACAGGGTCTG AGAGAGAGAG AGTGGGGACA GGGGCAAGAG ACGCGAAGAA
  TGGAGACAAG ACAGGCTATC TGATCAAATC TCATTTATTG GAAGGCAACT ATGGGTATAT
  ATGCACTTGC TGGGAGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737221	ENSMUSSNP3711209	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45798588					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141171158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	634 bp proximal
Gm42337	predicted gene, 42337	139 bp downstream
Rr603768	regulatory region 603768	349 bp proximal
Rr603769	regulatory region 603769	818 bp proximal
Rr603770	regulatory region 603770	1258 bp proximal
Tssr40079	transcription start site region 40079	810 bp upstream
Tssr44320	transcription start site region 44320	1582 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	826 bp upstream