rs45796992 SNP Detail

Summary

• ID
  rs45796992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAAGGCA GAAGAGATAG GCGTCTGACC TTTAGCAGAC
  AGGACTGTGT TTATTATTGT TCATAGAGCG GGGCAGTCTC TCTCCCTTGG GAAACTGAGG
  R
  GTCAGTCAGA GGGAAAAGCT GGTTGTGACT CGCTATAGTG GTGGGGTGAG GGTTTAGGAA
  TGAAGTTGTT GCAATGTAAT TCTGTCCTGC TGTCTCCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737009	ENSMUSSNP479245	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320909577	CHEV_3_121906729	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45796992					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997460 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	35 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1031 bp distal
Rr584258	regulatory region 584258	166 bp distal