rs45793323 SNP Detail

Summary

• ID
  rs45793323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC ACTGAGGCAG GCTTGTCTCA
  Y
  GAACAGGCTG CCTCTGCAGT GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932505	NES16191123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45793323					SNP	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932505	NES16191123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152147 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	862 bp distal
Rr637290	regulatory region 637290	1114 bp distal
Rr637291	regulatory region 637291	1063 bp distal
Rr637292	regulatory region 637292	1157 bp proximal
Tssr58395	transcription start site region 58395	1681 bp downstream
Tssr58396	transcription start site region 58396	1667 bp downstream
Tssr58397	transcription start site region 58397	1632 bp downstream
Tssr58398	transcription start site region 58398	1609 bp downstream
Tssr58399	transcription start site region 58399	1580 bp downstream
Tssr58400	transcription start site region 58400	1547 bp downstream
Tssr58401	transcription start site region 58401	1513 bp downstream
Tssr58402	transcription start site region 58402	1484 bp downstream
Tssr58403	transcription start site region 58403	1466 bp downstream
Tssr58404	transcription start site region 58404	1455 bp downstream
Tssr58405	transcription start site region 58405	1399 bp downstream
Tssr58406	transcription start site region 58406	1370 bp downstream
Tssr58407	transcription start site region 58407	1348 bp downstream
Tssr58408	transcription start site region 58408	1285 bp downstream
Tssr58409	transcription start site region 58409	1257 bp downstream
Tssr58410	transcription start site region 58410	1239 bp downstream
Tssr58411	transcription start site region 58411	1208 bp downstream
Tssr58412	transcription start site region 58412	1196 bp downstream
Tssr58413	transcription start site region 58413	1172 bp downstream
Tssr58414	transcription start site region 58414	1150 bp downstream
Tssr58415	transcription start site region 58415	1132 bp downstream
Tssr58416	transcription start site region 58416	1114 bp downstream
Tssr58417	transcription start site region 58417	1060 bp downstream
Tssr58418	transcription start site region 58418	1034 bp downstream
Tssr58419	transcription start site region 58419	1014 bp downstream
Tssr58420	transcription start site region 58420	979 bp downstream
Tssr58421	transcription start site region 58421	955 bp downstream
Tssr58422	transcription start site region 58422	942 bp downstream
Tssr58423	transcription start site region 58423	921 bp downstream
Tssr58424	transcription start site region 58424	862 bp downstream
Tssr58425	transcription start site region 58425	823 bp downstream
Tssr58426	transcription start site region 58426	805 bp downstream
Tssr58427	transcription start site region 58427	771 bp downstream
Tssr58428	transcription start site region 58428	760 bp downstream
Tssr58429	transcription start site region 58429	682 bp downstream
Tssr58430	transcription start site region 58430	651 bp downstream
Tssr58431	transcription start site region 58431	552 bp downstream
Tssr58432	transcription start site region 58432	471 bp downstream
Tssr58433	transcription start site region 58433	446 bp downstream
Tssr58434	transcription start site region 58434	within coordinates
Tssr62617	transcription start site region 62617	1610 bp upstream
Tssr62618	transcription start site region 62618	1587 bp upstream
Tssr62619	transcription start site region 62619	1551 bp upstream
Tssr62620	transcription start site region 62620	1518 bp upstream
Tssr62621	transcription start site region 62621	1434 bp upstream
Tssr62622	transcription start site region 62622	894 bp upstream
Tssr62623	transcription start site region 62623	874 bp upstream
Tssr62624	transcription start site region 62624	728 bp upstream
Tssr62625	transcription start site region 62625	589 bp upstream
Tssr62626	transcription start site region 62626	524 bp upstream
Tssr62627	transcription start site region 62627	479 bp upstream
Tssr62628	transcription start site region 62628	347 bp upstream
Tssr62629	transcription start site region 62629	167 bp upstream