rs45789916 SNP Detail

Summary

• ID
  rs45789916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGTAAA GATCATAGAG
  TCATCTTTCT CCCCTCTAGT GGGCGAAGTC TGAATATATA AACCAGAAAC CAGGAAGGAA
  GGAAGAAAAT GACCTATCTC CAAATGTTCA CCCGACACTG AGTCCGGGTT CATTTCCAGA
  GGCAGCCAGT CTCATTAGGA ACCATGTTTT CTGGCCGCTG TGAGGCAGTT TCCACAGGGA
  Y
  TCATTTTGGT AAGGGCCTCA TGGGAAGAAC CAGGTTTGCT CCTTGGAGTT GGGAAACACA
  GCAGCAGTCA GGAAACTTCC TCTGCTGAGG CCAGGACATT TTCGGCTTTA CAGGTTGAGT
  CAGAACTGAG CCAGTGAACG ACTTTATTTT TTTCTCATTC GGCAATTTAC ATTTAGAAAG
  GAAAAAGGGT TATTAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136043346	ENSMUSSNP5504666	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321009991	CHEV_3_146003585	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45789916					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046376 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1775 bp distal
Rr587006	regulatory region 587006	151 bp distal
Rr587007	regulatory region 587007	1374 bp proximal