rs45786977 SNP Detail

Summary

• ID
  rs45786977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCTAA ATTAGACTCA
  AGTATATTAT GCTTTGCCAT TCGTAGCTCA GTGATTTCAT GCAAGTGACT TAAAATCTGA
  ATCTTTTTGA TTCCAGAATT TATAGAAAAC GCTACCGATT GTACGTCTTG ACTAATGGTT
  AAACTTACTT TTATGTGGGT ATCACCTTTG AAGCTGTACA CCATAGTGAT TAGGACTACC
  R
  TCTGTGGATC TGATAATCAT AGGCTCAAAC CTCAGAGCTG TGCCCCTCAC TTGTGTGACC
  TTAGACTCTC AAGGACTCCT TTTCCCTGTT TGTGGAATAG AGACACTCGG GTCCTGCCTG
  TATGCTCTTG GGGAGTATCT TGTGCTGCCC CACCATCATG AACTCAGATC AGGATTTCCC
  AGTAGCCTGT GTGTGCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115198	ENSMUSSNP3540953	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320438728	CHEV_2_102389246	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45786977					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	677 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	923 bp upstream
Rr561703	regulatory region 561703	542 bp proximal
Rr561704	regulatory region 561704	1814 bp proximal
Tssr19094	transcription start site region 19094	956 bp upstream
Tssr19095	transcription start site region 19095	1010 bp upstream
Tssr19096	transcription start site region 19096	1028 bp upstream
Tssr19097	transcription start site region 19097	1049 bp upstream