rs45785556 SNP Detail

Summary

• ID
  rs45785556
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACGTG CACACACGAG
  CATCCACAGG CACATGCACA CATGCTTGTG TGCACATACC AGGCATGGTG AAGAATACTA
  TAATCCCAAC ACTGGGTAGA TGGAGACAGC CAGCCTAGCC TTGCGGGTGA ATCCTGGGTT
  CCAGTGAGAG ACCTTGCAGC AAAACTCAAG GTAGATCTAG GAGGATACAA GCTGGCATTC
  C
  ACTGAGCCAG CAACTGGCCC CCTCCACAGT TCTTGCTATG TCTTCATAGC AAATTCCTCT
  GTTAGAGGTA ATGCTGTGTG GAATGGTGTC TTAGCTAGGG TTTCGTTGCT ATGAAGAGAC
  ACCATGACCA AGGCAACTCT TACAGCCAAG CATATTCAAA CCACCACAAA TAGCAAACAA
  GCCTAGCTTC AGGTACCTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553147	ENSMUSSNP2623603	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs45785556					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621938 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	767 bp upstream
Rr602181	regulatory region 602181	1478 bp distal
Rr602182	regulatory region 602182	1162 bp distal
Rr602183	regulatory region 602183	364 bp proximal
Rr602184	regulatory region 602184	778 bp proximal
Rr602185	regulatory region 602185	1344 bp proximal
Tssr39650	transcription start site region 39650	553 bp upstream
Tssr39651	transcription start site region 39651	757 bp upstream
Tssr39652	transcription start site region 39652	787 bp upstream