rs45780880 SNP Detail

Summary

• ID
  rs45780880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136862481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG ACCCAAAGGG GACAGAAGCA
  Y
  ACACCCTGGA GCTGAGCCCC AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147595585	ENSMUSSNP5395394	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321361513	CHEV_4_136691085	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45780880					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136862481 () rs orientation: forward

Symbol	Name	Function Class
D4Mit68	DNA segment, Chr 4, Massachusetts Institute of Technology 68	1952 bp proximal
Rr602550	regulatory region 602550	762 bp distal
Rr602551	regulatory region 602551	652 bp proximal
Rr602552	regulatory region 602552	1272 bp proximal