rs45779885 SNP Detail

Summary

• ID
  rs45779885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131140948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGGACA AAACTGTCCT
  CAAAATCTCA TAATTAAGAG ACAATATTTG GAATTGATAT GAAGAGAACA GCACTGATCA
  GAAAAGAAAA GAAAGACCAA CCACCCCTGA AGGAAGGAGG CGACGATGGT AGGTATGCAG
  GTAAGGGTTT GATACTGTCT GGTAGGTATG CAGGTAAGGG TTTGATGCTG TCGTATTCAT
  W
  CACCATTTAG TCATTCCATT TTAACAATCC CAGTAGGCTT TCTCCATACT CTGAAGAGTT
  CTGAAATAGG AATTTAAAAT TGGCAATGGC ATAGGTCCGT GCTGTTGTAC CACACGAAGC
  GACTGCCATT TCACACTTTC ACTGATTCCT ATGTTGAGGG TTTAGCGTAC ACAGTGCCCC
  TGCCTCCCAG TGAAATAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080872	NES16597215	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45779885					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080872	NES16597215	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131140948 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66385	predicted gene, 66385			within coordinates
Rr585342	regulatory region 585342			607 bp proximal
Rr585343	regulatory region 585343			684 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant