rs45778381 SNP Detail

Summary

• ID
  rs45778381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150523905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTCTCT GCTTCCTCAT
  GCAGGAATAT TATCCTCTGA ACAATGAGAG ATGAGAAAGG GGCTAACTTA TCACTCACAT
  GTATCTAGTT TCTGTGAAAG AACCAGAAGT GCCTGTCTAC TCTTTTAGGA ATATTAGAAC
  TTTCCCTAGT ATAGGATGGA ATCACCAACT TGGCCTGTGA AACAAGGCAG GTGATTGCTG
  K
  GGAAGAAGAG ATGGAGAGAG AAAAACAAAA TGACATGATA ACATGAAATA TATTAAATGG
  TTGATTTAGT ACTTTCAGCT GAGTTATCCT GAGAAATATT CTTTCCTCTA AAGAAATTAA
  TCAGACAGTA GATATTTTAA GCACCCTGTG AAGCAGCAAG AACACTGATT TGTGGATTCT
  GAGGGCTTCA GTTACATTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61099724	NES16604064	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs45778381					SNP	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099724	NES16604064	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150523905 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	1108 bp proximal