rs45776790 SNP Detail

Summary

• ID
  rs45776790
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5122257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTCCGCGCGG CGGAGGTTGC CTCGATTATC AGCCCCGCCC
  TTCCAATAAT GAGCCACGCC CCTTGGAGGC GGGGGCGGGG TGGGGGAGAG AAAACTCCCC
  S
  GAGGCCCCGC CGGCCAAAGC CATAGCCTCA CCCCTCGCCA GCTCAAAGAT GCCCTTAGAG
  CTATTGCTAG CCCCTCTGCC TTATCACCTC CCCCAGGACC C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146009906	ENSMUSSNP5958823	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45776790					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5122257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd248	CD248 antigen, endosialin			1589 bp downstream
Gm46658	predicted gene, 46658			within coordinates
Rr405800	regulatory region 405800			within coordinates
Rr405801	regulatory region 405801			1007 bp upstream
Rr542921	regulatory region 542921			within coordinates
Rr542922	regulatory region 542922			11 bp proximal
Rr542923	regulatory region 542923			1092 bp proximal
Tmem151a	transmembrane protein 151A			Intron
				Noncoding-Transcript-Variant
Tssr157540	transcription start site region 157540			139 bp upstream
Tssr157541	transcription start site region 157541			100 bp upstream
Tssr157542	transcription start site region 157542			268 bp downstream