rs45774963 SNP Detail

Summary

• ID
  rs45774963
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAAGCCT TGGGCTTATT CTACATCCTA
  ATGTCAATCA ATCTGCCAGT GCACCTAAGG CTCCCAAACA ACTGTTTACT GTTCAGTACA
  TTTTATTCAA TAATAGTAGC AGAAGTGATC TGCATTTTTA TTTTATGAAA TATGATAATT
  M
  TAGGAATTAT TTAAAGATTT TGGTTTTTAG TCTTTCTTAT Attacatcta gaccacagct
  gccagagcat cctctcttcc aagtccttcc cttctcccta cccaaataca cttttctgga
  atttcctttc ataaagaaag caagccttct                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138784451	ENSMUSSNP6574321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324184728	CHEV_12_115716025	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45774963					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441434 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1193 bp downstream
Tssr3975	transcription start site region 3975	1677 bp downstream
Tssr118082	transcription start site region 118082	1692 bp downstream