rs45774259 SNP Detail

Summary

• ID
  rs45774259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19718094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCTACA GATTTCTAAC
  AAAGGTATAT TACCACTACT TCCAATTCAT TAAGATGTTG GTGGTCTTTA AACTTCTCAC
  TTTCATACCA GGTTTGGTGA CACACACTTC TAATCTCAGC TACTCAGGAA GGTGTGTCAG
  GAGGATTAGA AGTTCTAGAG TAGCCTGTAT AAAAATAAAT TAAAAATAAA AGCTGGCTGA
  R
  GATAAAGAAC AATTTTCTGG TACACAAAGT CAACTAGCCC AGTCTCCAGT GCTTTGAAGA
  AAAGTAAACT CTCTCCCTGT TCATGTGTTT ATTTCAGTTG TTGGACTTCT TAAGAAAATA
  AGATAAAAAA AAAAAACATC GTCAGTATAG GGTCATGCAT ATTGTGTAGG ATATACTGGT
  CTAAACATGA CTATTTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134669657	ENSMUSSNP5428965	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320679372	CHEV_3_19563930	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45774259					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19718094 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	249 bp distal
Rr574019	regulatory region 574019	512 bp proximal
Trim55	tripartite motif-containing 55	Intron