rs45770661 SNP Detail

Summary

• ID
  rs45770661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AGATGAGCCA GTCGGGCGTG
  R
  TGGCACACGC CTTTAATCCC AGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147848448	ENSMUSSNP5960880	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321412800	CHEV_4_144786049	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45770661					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	805 bp distal
Rr398672	regulatory region 398672	928 bp downstream
Rr604319	regulatory region 604319	1152 bp distal
Rr604320	regulatory region 604320	1777 bp distal
Rr604321	regulatory region 604321	651 bp distal
Rr604322	regulatory region 604322	1038 bp distal
Rr604323	regulatory region 604323	549 bp proximal
Tssr44481	transcription start site region 44481	1182 bp upstream
Tssr44482	transcription start site region 44482	1153 bp upstream
Tssr44483	transcription start site region 44483	1102 bp upstream
Vps13d	vacuolar protein sorting 13D	1141 bp upstream