rs45768853 SNP Detail

Summary

• ID
  rs45768853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19683523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGATGATT TTCAACCTTT
  CAACCTTGTA TTTTGTGTGG TGTCCAAAAC TTCCAGGCAT GCATTAACCG GTATGCAACA
  GCCGCTCCCC AGCAAAACCC GGAAATAGAC CCAGCTTTAA ACCCTGGCTA AGCTGAGGGT
  CCGGGGCTGT GTGGCTCCAC GGGGGACGAG GCCTAAGGGT GTATATCATG GCGCTGGAGT
  R
  ATTTTCTTCA GAAGCGTACG GGACTCTAGT CTTCTCCAGG AAGAAATTGT GGGGCATCGC
  GTAGACTAGG GACTTTCACA GAGGGTAAAT TGAAAATTAA AACAAACGAA CAAATGAAGC
  AAACCAAACC AAACCGAACC AAAAAAAAAA AAAAAAAAAA AAAAAGGTCC GATTTAGGCT
  CCCTCGTTAA AAGACATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376859	NES15884480	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45768853					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376859	NES15884480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19683523 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	626 bp upstream
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	292 bp downstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	1328 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	912 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	489 bp downstream
Rr574008	regulatory region 574008	693 bp distal
Rr574009	regulatory region 574009	136 bp distal
Rr574010	regulatory region 574010	865 bp proximal
Tssr32702	transcription start site region 32702	674 bp upstream