rs45749719 SNP Detail

Summary

• ID
  rs45749719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52815217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTTTAT AAGAGCTGAT
  TTAGGCCATG GTTAGACGGG TTAGAACTAT TCCAAGAGCA GTGGTGGAGC TTGGGGCCAC
  TTGGAGCTGG TGCTTAATAG CCCTCTTCCT TCACTGCTTG GATACTTACA TAAAAACTGC
  TATTCTGTGT TGTGACTGCA GGTATGGTTG TTGGAGGTAC CCTTGGAAAT GGCATACCTC
  Y
  CTCTCTTTAT TTCCTTATAG AAAGCACAAA AGGTCTTTTA AAGTCTGAGT TTTGAAGTTG
  CTGCCTTTGG GAGAGTTGGC AGTTACTGTG TACTTTAAGC CTCTGAGTGA ATGGCACCAA
  GCTTTGGGAG AAGACAGCAA TGCACATGGA ACAGAGAGTG GCTGGGCATC TATGCTCTGA
  CATTGAGTGC AAAGAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135179450	ENSMUSSNP2219819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320765876	CHEV_3_52711718	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45749719					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52815217 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	360 bp distal
Rr576601	regulatory region 576601	421 bp distal