rs45749241 SNP Detail

Summary

• ID
  rs45749241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCATAAG TGATCAGACA
  GTCGTTTTAA AGGGCGTGAC AAGTACACAA GCTGGAAGCC TTCAGAAGGG CGTGATTTAA
  GAACTGCGTT TCCAAAGGTG GAGAGGTGTT AGACACACAG GAGACACACC TCGGGTAGCG
  GACAATATAC ATGAGAATAT GTGAAGTTCG ACAGAACATG CTATGGTCAC CATAAGAAGT
  S
  CACAGGCCTG GAGAATATAG TCTGTGACGA GAACTTAGGG GGCCTGCGCC ACGAGAAGGT
  TGGAATCCTT GGTATTTCTC TCTCTCTCCC CTCCCCCATC CCCATGTGTC AGTGTGTTTG
  TGTGTGTCAG TGTCTATGTG TCTGTATGTC GTGTGTCATT GTGTCTGTGT GTGTCAGTGT
  GTGTGTCTGT ATGTCTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136100772	ENSMUSSNP5300477	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321028024	CHEV_3_151766127	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45749241					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			898 bp downstream
Rr587451	regulatory region 587451			1492 bp distal
Rr587452	regulatory region 587452			1636 bp proximal