rs45744534 SNP Detail

Summary

• ID
  rs45744534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109249964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGCA GATATATAAG
  TATTGAGTGC CATATGTGTT TACAATAAGG ATCAATTATT TTAGACTCTC TTAGAAACCT
  GAATGATGGG TGATTGCTAA TTCTGTGGAC TTGCCCACAA TTGTGGCAAC CATAGATAGT
  CCTGTGGAGG GCTTCAGTGG TTGTTTCTGT ACTGTCTGAG TTAACTGTTA GGAGTAAGGT
  Y
  GTGCCACGCA CAGGAGTCAC TTGTTAGATC TCCAGTTCCA TTTGATCAGT AGTCTCAGTA
  GCAGCATGAA GTCTTGTGCT TTGATGCCAC GTGCTGTGCA TATTTCCTCG AAGTTTAGTT
  TCTGGAACTT TCAGCAGTTA CTCATCAAAG TGTTCTTAAT AATCAAATTT CTCTCTTCTT
  TCTTTTTTCC TTCCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135586762	ENSMUSSNP1310280	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs45744534					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109249964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13716	CpG island 13716			1294 bp distal
D3Mit158	DNA segment, Chr 3, Massachusetts Institute of Technology 158			1569 bp proximal
Rr367533	regulatory region 367533			720 bp downstream
Rr583407	regulatory region 583407			1985 bp distal
Tssr31285	transcription start site region 31285			1978 bp downstream
Tssr31286	transcription start site region 31286			1956 bp downstream
Tssr31287	transcription start site region 31287			1933 bp downstream
Tssr31288	transcription start site region 31288			1905 bp downstream
Tssr31289	transcription start site region 31289			1861 bp downstream
Tssr31290	transcription start site region 31290			1828 bp downstream
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant