rs45739446 SNP Detail

Summary

• ID
  rs45739446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84394810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGTTTGT GCAGGGGCTC
  ACATACTGAA TTTGTCTTTG AAAGGGCAGG GGAAACAAAG ATTGGAAATA TTCAGGTCAT
  ACATTTCCTC TTCTTGAGAA TTCTTAAAAA GTTACAACTT AAAGTATTTA AAAAGGTTTC
  CAAGAAGATC TGGGTGTTCC TATCCTTGGG GATATTCTGT GGATTTGTGC TTGTTTCTTG
  R
  CCAGGGTTCT CTGACAAACG AGACCAAAAG CAAAAATTAT ATAAATCTTG CGAAACAAAT
  AGAGGAAAGC TATTCTAAGG CCACAAACAA GCAAACAAAC AGACACATGT TCTTGGTGGA
  GCTACTCGTT GATAAGGGAG TGCATGAAAT TTCTGAGGGA AATCCTACTG GAGAGAGGAC
  TTCCTAGCAC TGAAGAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60500409	NES16526148	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45739446					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500409	NES16526148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84394810 () rs orientation: forward

Symbol	Name	Function Class
Gm2477	predicted gene 2477	956 bp downstream
Rr392066	regulatory region 392066	926 bp downstream