rs45739416 SNP Detail

Summary

• ID
  rs45739416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC TTAAGATTCC TTGGGAAGCT
  Y
  CCATTTCTTT GAGGTTCGTT ATTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147338539	ENSMUSSNP954498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320476616	CHEV_2_119489536	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45739416					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	847 bp distal
Gm75025	predicted gene, 75025	1304 bp downstream
Gm75032	predicted gene, 75032	1293 bp upstream
H3f3c	H3 histone, family 3C	1826 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	979 bp upstream
Rr397235	regulatory region 397235	828 bp downstream
Rr563557	regulatory region 563557	1013 bp distal
Rr563558	regulatory region 563558	489 bp distal
Tssr25825	transcription start site region 25825	965 bp upstream