rs45734984 SNP Detail

Summary

• ID
  rs45734984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143630094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCGGAAA GCCAGGTGTG
  GAGCATCCAT CAGTAGCCCA GCGCTGGGGA ACAGAGAAGC CCTGGAACTC ATTGGTCTAC
  CGCCATCTGT CTCAGAAGTA AGACCAAGAG CGAAAAGAAC GCACACTACA TCGACCTCTG
  GATTCTTGCA CACATGCACA CGCAAAGGGT AGAGGTAGCA TGTGGCCTCA GTGGGAGCTC
  R
  CCTATCCTTG GACAGGCACC AGAGTGTCCT TTCTGTTCAA GGATGTGATG TCATTTAGGA
  GTTTTTCTGT AAAAAGAGAC AATGTTTTCA TAGTAGACCC TCAACTAAAA GACTTAATTG
  GTGTGCCTGA AACCAGCTTC CAGAGAGCCT GAAATGGGAG CATTCAGGGT CAGCCTGGCA
  ACAGAGGAAG GGTCTGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60852181	NES15998100	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45734984					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852181	NES15998100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143630094 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	1330 bp distal
Rr624268	regulatory region 624268	1145 bp proximal
Rr624269	regulatory region 624269	1714 bp proximal