rs45734892 SNP Detail

Summary

• ID
  rs45734892
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCTCA CTGCCACAGC
  TACTTTTTCA GTACCTAAAA GAGCTCCCCG GGCAGCATAA ACTAGGGGGT TACACTCCAA
  CAAATGTCTG CAACATCTGG CCTATGTGAG CCTGCCTCAA GAAGAAAAGA AAAAGAACAA
  CTTACTGAGC GATTTAGGAG TGTGGTAAGC CTGGAGCCTA ATGTAAACAA AAGGTTACTT
  M
  AAAGAATGTG TTTATTTCAA ATTCATAGCA GTCCCAATGA CCAGGCTCAG ATAATCAATG
  CTATTTCCAG CCTTATATGA ATGCCATTCT ACTCAAGAAA AATCTCATGG GGTTGGCTGC
  TCAGGACTTA GTGGGTAAAG TGCGCTCTGA TGAAGCATGA GAACCCAAAT TCAAATCCCT
  CAGCACCGAT ATACATATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146163668	ENSMUSSNP5535219	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321072563	CHEV_4_33038459	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45734892					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951484 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	643 bp upstream
Cpgi14106	CpG island 14106	120 bp distal
Cpgi14107	CpG island 14107	155 bp proximal
Rr590062	regulatory region 590062	669 bp distal
Rr590063	regulatory region 590063	976 bp distal
Rr590064	regulatory region 590064	153 bp distal
Rr590065	regulatory region 590065	533 bp distal
Tssr41164	transcription start site region 41164	618 bp upstream