rs45727669 SNP Detail

Summary

• ID
  rs45727669
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90337543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGACTG AAACTTGTCC
  CAAGCCTCAC AAGACAAACA GCAGATGGTC TGGGAATTCG GCAGGGAGGA TATGGGACCC
  AGCACCGCCA AAGGGGCCAA GGGACCTGGC TCACTAATGT TGCTTCTCCA AGAACAGACC
  ACACCCAGTT CTGTGGCTTT ATTTTCTTCC TTGTTTGGCA GGAATCTAAG AGTCTAAGCT
  S
  TTTGCCCTCA GGCTTCTTGA CTTGCTTCTC CACTTCCTGG ACTGTCTCCT AGTGTGCTGT
  TGAGAGGCTC TTCCCTGTGC AAGGTCACCA CCCACAGCTG TGTGTCAAGT TTAGCTCACT
  CCATGGCCTT GGCCTCTTCG TACTCCCTCT TTTGGAGTGT CTGGTTGGTG ACAGCTTGTG
  TGCTGTGTGT CCCCTTGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60907172	NES15949573	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45727669					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907172	NES15949573	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90337543 () rs orientation: forward

Symbol	Name	Function Class
Rr634185	regulatory region 634185	836 bp distal
Rr634186	regulatory region 634186	within coordinates
Uroc1	urocanase domain containing 1	Intron