rs45723391 SNP Detail

Summary

• ID
  rs45723391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTCCAC TGGCAGTTTC
  ATGTGTCCCC TTTCTGCAAT AGAACGTCCT GGCTGTTTAT CACAGAGTTA CCTCAACTCT
  TTTTGGCTCA CCTTCGAGGT TGTGGTCCAC AGACAAACAT TTCGTACTCT TCACTGTTCT
  CCAAGCCCTC TGAGTAGGTT TCTTCCTGAT TATGAGTCAT GCTGTGCTTG CTCTTTGTCA
  S
  AATCTCACTT CGTCCCCTTC AAAGTGGAAA AACCTCTACA CACTCACAAG GCCATGCTCT
  ACTCCCTCAC CTCGTCCTTG CTTTTGTTTT TTCTGTCTTG TCCCCACAGT GGTAAGCATA
  TCCCTGTGTC GGGTGTTCCT TCCGTCATGT GCTGTTGCTT GCTCTTGGTG ACTTCCACTC
  TTTGCCTACT GGGCTTTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838248	ENSMUSSNP5001113	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss320947059	CHEV_3_126363318	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45723391					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1979 bp upstream
Gm43006	predicted gene 43006			1077 bp downstream
Rr397996	regulatory region 397996			1514 bp upstream
Rr584670	regulatory region 584670			1253 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1462 bp proximal