rs45718036 SNP Detail

Summary

• ID
  rs45718036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30172825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCAGCT TCTCTCCACA
  CCATTTGCAG TAGCCCTGGC AGGCAACACG GCAGCTAAAC TCTTAGGTGG GATAGAGAAG
  AAAGCTGGGG CTCACTAAGT ATTCATGGCA TTCAGCAGTG AAACCTCCCA TTTTTCACTA
  CCACTATAGT CTTGTGAACT ACGTTGCATT ATTCTAAATT AGAGGCCTGT ACTACCATTC
  Y
  TAGACTTATA AAATCTGTTA ACCAATCAGG AAACAAAGGA AATGCACATG GCGTCTTCCT
  GTGCTGTGTT TCCATTTTCA AACACATATA CAGAGAGGCC TCCATAGAGT GGCACATAGG
  GAATGTAGCT TCTTGGACAA ACAAAAATGT GGGGGCTAAG ATTAGTCACA CTGATCAGCC
  CCTTTTATTT TTGTTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134729157	ENSMUSSNP3992038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45718036					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30172825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			40 bp proximal