rs45700963 SNP Detail

Summary

• ID
  rs45700963
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTCTGG CTTGCTCATC
  CATGGCCTGC TTACCCATGG TTGCTTTCCT ATACCACCTA GGATCATCTG CCCAGAGGTA
  GCACCATCCA CAACGGGATA AGCCCTTCCA CATTAAACAC CAAATGAGAA AACGTCTCAC
  AGAGTTGCCT AAAGGCCAAT CGAATGGAGG CTTTTTCTCA AGGGAGGCTC AAATGGGATA
  S
  CCTGGCTTGT GTCAAGTTCA CAAAAAACTA ATCAGAACAC CCCTTCTATG AGTATTTCAT
  ACACAGAAAT ACAGACAAAC ACGCACGGAA GACATAAATT ATGTGTGTTA TATGTGTGTG
  TATGTATAAT TTATCTATAT AAGTTGCACA CATACATAAA TACACAGGAG GCATACATAT
  ATGTACATTC ACAGACGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111662	ENSMUSSNP4554878	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45700963					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1232 bp proximal
Rr587740	regulatory region 587740			1678 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1534 bp upstream
Tssr36239	transcription start site region 36239			1314 bp upstream