rs45700481 SNP Detail

Summary

• ID
  rs45700481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTATGTTC TAACCTCAAC
  TCTTCCCTAA CTCTTCGCTA AGTAAAAGGG AACTGTCTGA GGCAGGGGGA TGGATGTCGG
  ACTGGGAACA TGGGTCATAG CTCAAGACTG GTTCTCCTGA GATAGAATTT TCCTTGCCTT
  TCTTCACAGT AATAAACCCC CAAAACTTAG GTGGCCTTTT TGGGGGAGTC TATTTCTATT
  Y
  ACCCCTGAAA CAGATAGCCA CTCTAGGCCA AAGAAAATTT GCTTCCAGTC CAGCTTAGTG
  AATGGGACAA ACTTATTGGT GTTGTCTGTA GGGACATGGG TGGCTTGGGC AATTGTATCA
  TCAAAAAGCC TACCCCAGCA TGGTGACAAG TGCTCAAAGC TAGTGACATC GCTGGTGTCC
  CCATTAGTTG ACAGTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147553201	ENSMUSSNP688470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321353453	CHEV_4_135451785	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45700481					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623181 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	466 bp distal
Rr602184	regulatory region 602184	172 bp distal
Rr602185	regulatory region 602185	101 bp proximal
Rr602186	regulatory region 602186	1002 bp proximal
Rr602187	regulatory region 602187	1125 bp proximal
Rr602188	regulatory region 602188	1153 bp proximal
Tssr39650	transcription start site region 39650	675 bp downstream
Tssr39651	transcription start site region 39651	474 bp downstream
Tssr39652	transcription start site region 39652	394 bp downstream