rs45699949 SNP Detail

Summary

• ID
  rs45699949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:149774209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTGGTG TTCTTTGGTC
  ACATTCTGGA AGATTAGCAC TAGGGTGAGT GATCTTGGAC CCCTAAGGTC ATTGTAAGAG
  CTTGTTCTAG AGCTAGCCCT AGCCTGGAGG GTCTGTGTAT ATATTCTCTC TTGTGAATGT
  GTTCTGTGAA TGCAGCAGAC CAGGATTTCC AAGTATCAAC TTGAGTGGAA ATCCAGATCC
  Y
  TGGGTCCAGG CAGTTGTTAG ATGAGTCAGG CTCAGATGAC CTTGGCTAAC AAGGTTCCAA
  AGGCATTACT CATACAGTAG TACATGAGGC TTTGGAGAAA GACCTGTTTG AGGTATTCAT
  GGTGAGTCCA GTCTGCTCCT GCCTATAGAA GCAGTACCAT AAGTCTGGGG TAGGTAATAA
  GCCTCACTAA TAAAGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147947595	ENSMUSSNP3632649	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45699949					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149774209 () rs orientation: forward

Symbol	Name	Function Class
Rr567007	regulatory region 567007	1231 bp proximal
Rr567008	regulatory region 567008	1752 bp proximal
Syndig1	synapse differentiation inducing 1	Intron