rs45699493 SNP Detail

Summary

• ID
  rs45699493
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135208461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAGAGT TTTGTTTTGT
  TGTTGTTGTT GTTGTTTTAA AGAAAAGATT GGAATAGGGC TGACAAGATG GCTCAGTGGG
  CAAACATGAT TTCTACCAAG GCTAACGACC TTAAGTCAAT CCCTGAGACC CACATAGTGG
  GAGGAAAGAG TCGCTTCCTA TACATTCTCC TCTGGCTCCA TACGTGAGGC CTGGCACTTG
  G
  GTCCCCCTCC CCCATCAGTA AAATGGAAAA AAAAAGTTGG AATTGTATAA GTGGGAGAAA
  CTAGCCTGTA AATTCTCTTC ATGTGAGAAA ACACATCTAG CATGATTGCC TTCTTGGGCT
  TCCCTCGTAG CTTCCTGCAA GGAACACAGA CACAGGAAGG AGACCCAAGC CCTGCTGCCC
  CCGCTAGCCC TGGGGTGCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135926769	ENSMUSSNP2286173	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45699493					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135208461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585725	regulatory region 585725			136 bp proximal