rs45699366 SNP Detail

Summary

• ID
  rs45699366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82961298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC ACGTACATCT TATTCTTTTC
  R
  TTTGTTTTGG TTTTATTCTC TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320820924	CHEV_3_82857913	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45699366					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82961298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	1054 bp proximal
Plrg1	pleiotropic regulator 1	1547 bp upstream
Rr397732	regulatory region 397732	1258 bp upstream
Rr578826	regulatory region 578826	within coordinates
Rr578827	regulatory region 578827	73 bp distal
Rr578828	regulatory region 578828	1041 bp proximal
Rr578829	regulatory region 578829	1450 bp proximal
Rr578830	regulatory region 578830	1575 bp proximal
Tssr29713	transcription start site region 29713	1525 bp upstream
Tssr29714	transcription start site region 29714	1584 bp upstream
Tssr29715	transcription start site region 29715	1603 bp upstream