rs45698986 SNP Detail

Summary

• ID
  rs45698986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118127946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCAAAACA CCTGACACAA AAAGTTCACA GGAGGCAGGG
  GACCTTGTTG AAGAGAACAG CCAGTGGTGG CAAAAGTCAG ACAAAAGCAG AGGAGTAGCC
  R
  AGGTGAGGGA GAGGCACAGG TGACTGTCAC AGCACGCTGT GACTAGGAAA GAGATGCCAA
  CTGGAGGAAG GTTTGGAAAC TCTTGGAGTT TTATCTGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147302790	ENSMUSSNP4087872	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45698986					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118127946 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598358	regulatory region 598358	157 bp distal
Rr598359	regulatory region 598359	51 bp proximal
Rr598360	regulatory region 598360	155 bp proximal
Tssr43045	transcription start site region 43045	1012 bp upstream