rs45698800 SNP Detail

Summary

• ID
  rs45698800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102111104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC GCCCCCACTC CTGCTTCCAC
  Y
  ACCGACGCTT TTAAATTTTT ATAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135554841	ENSMUSSNP3698513	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320854831	CHEV_3_102007711	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45698800					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102111104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			within coordinates
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			within coordinates
Rr582208	regulatory region 582208			165 bp proximal
Rr582209	regulatory region 582209			268 bp proximal
Rr582210	regulatory region 582210			895 bp proximal
Tssr34830	transcription start site region 34830			788 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant