rs45697539 SNP Detail

Summary

• ID
  rs45697539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97962082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTTTCC TGCTTCTTAG
  CTGGGGCAAA AGCAAGTTAT TTGTTAAATG AATAGAGAAT ATAAAACTTT CTGACAGAAG
  CAGGTGTTCA GATGAAAACC TTGAAGTTTA TGAAGAGGAT ATATTGTTTT CCTCACATGA
  ACTGCATGTG CATCTGTTGG AACAATACAA TCTGTTGTAC TGTTAGTAAT ACAGATGTTT
  R
  GACATATTCT GCCCAACACC CGTGGATGCA CACTCTGCAT TTAAGAGCAT CCCTCAATGG
  TTTGCTCATG TGCAGCCTAG TGCATCTGCA TATTTAGTAA TCCAGGAGTG ACAGGGGGAC
  AAATGAATAT CTCTTGATGG CAACAACTGA AACCAAGGTG CTAAAACTGC CAAAATCAGA
  TCTCTTTAGT TGTTTGGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60914626	NES16221462	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45697539					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914626	NES16221462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97962082 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635251	regulatory region 635251	1478 bp proximal