rs45696088 SNP Detail

Summary

• ID
  rs45696088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148656528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACCATAC AGGGTTTCCC TAGGCTAGCC TTGAGTTCAG
  CTGTGTAATA ACCCTGTAGC CCAGGCAGGC CCTGAACTTT CAGTCCAGTC CCACCTCTTC
  R
  CCCCCAACCC TCAGCTTTCC AAGTAGCTAG AATTACAGCC TTGCACCACC ATGTCCACCT
  TTCTTTGGAC TACTTTGAGT GTGTTGACTT GGTGGTGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148011794	ENSMUSSNP3557542	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321421265	CHEV_4_147946180	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45696088					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148656528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Rr604704	regulatory region 604704			878 bp distal