rs45691141 SNP Detail

Summary

• ID
  rs45691141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38541240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCGGTC TGTGCTCTGG
  CGTAGATCTG GGGCTTATTC ACAAAGTCAA GCTTTAAGGA GTTGGGCACC TTCTGATTAT
  GCCACAGATT TGAAGAACCC TGCCTCATGT GTGCTTTCTT GCCAGATGAC ATGGTCTTTA
  CTGCAGATTT TCCAAAGAGC TTACATTTGA TTCCCACTGA ATCTCAGGAA GGCACACATT
  R
  CACAGGTCCT AAGTGTGGGA GACAGTGGCT GACCACAGCA TAGAACAAGT TCACAAGTAT
  ATAGCCACGC TGCCTCTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TTTGTGTGTG TGAAAGAGAG AGAGAGAGAG AAAGAGAGAG CACAAGCCAT TCTTGTGAAG
  TTATATTTTA TGTTTTAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss134837256	ENSMUSSNP6292582	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320719981	CHEV_3_38386013	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs45691141					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38541240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13104	CpG island 13104	1685 bp distal
Gm65619	predicted gene, 65619	1608 bp downstream
Rr575676	regulatory region 575676	1976 bp distal
Rr575677	regulatory region 575677	1256 bp distal
Tssr28929	transcription start site region 28929	1880 bp downstream