rs45690866 SNP Detail

Summary

• ID
  rs45690866
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43480051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTCGAACTC AGAAATCTGT CTGCTTCTAC CTCCCGAGTG
  CTGGGATTAA AGGCGTGTGC CACCACGCCC TGCTCAAAAG GAGCTTTCTT ATTTTTCTTT
  C
  TTTTTTTTTT TTTTTTTTTT TTCTTGTTAA AGAGCAAGGG TCTGGAGAGT TGGCTCAGTA
  TTAAGAGCAC TCGCTCTTGC AGAAGACTCT GCTTGGATCC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146240259	ENSMUSSNP7198507	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45690866					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43480051 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	1235 bp upstream
Rr398231	regulatory region 398231	1502 bp downstream
Rr590996	regulatory region 590996	1274 bp distal
Rr590997	regulatory region 590997	1661 bp distal
Rr590998	regulatory region 590998	1145 bp distal
Rr590999	regulatory region 590999	209 bp distal
Rr591000	regulatory region 591000	974 bp distal
Rr591001	regulatory region 591001	363 bp distal
Rr591002	regulatory region 591002	152 bp proximal
Rr591003	regulatory region 591003	871 bp proximal
Tssr41421	transcription start site region 41421	1240 bp upstream