rs45689869 SNP Detail

Summary

• ID
  rs45689869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141748978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCATGCG TCACTGTTTA
  AAAATCGGGT GGCATCTGGC AAGTTCTGTG GCTCTGCTTG TACTCCTGGG ATTCTCTGGA
  ACTTTCTCTC GTAGTGTTTG ACATCCCCTC TCTCCCCAGC CTCTGACACA GGGCTTCCCT
  AGCCGGAGAT GCTGATCCCA CATGGAGCCC ATAAAACAAT GAGTGGGAGG CCTTGGCACT
  R
  CATTCAAAGA TCTTTATAGA ACAGCATAGC GCACTGTGTG AAATTTGACA TGTGGGGAGC
  CCCTGTAAAA CTCTTTAATG GAAACCCACA ACTTCTGGAA AAGGCTGAGG AAACACACAC
  TAGTTTGACA ATTACTATGG GTAGTTAATA AGAGACAATA AGCACTTAAA AATAATCAAA
  AAGCAATAAA ACCCTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61089231	NES16604396	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45689869					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089231	NES16604396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141748978 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Rr586379	regulatory region 586379	351 bp proximal